J3_6SV4_049

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CA*UAACUGAAU*AGGAAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|BQ|C|1631
6SV4|1|BQ|A|1632
*
6SV4|1|BQ|U|1641
6SV4|1|BQ|A|1642
6SV4|1|BQ|A|1643
6SV4|1|BQ|C|1644
6SV4|1|BQ|U|1645
6SV4|1|BQ|G|1646
6SV4|1|BQ|A|1647
6SV4|1|BQ|A|1648
6SV4|1|BQ|U|1649
*
6SV4|1|BQ|A|1806
6SV4|1|BQ|G|1807
6SV4|1|BQ|G|1808
6SV4|1|BQ|A|1809
6SV4|1|BQ|A|1810
6SV4|1|BQ|G|1811

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain AN

60S ribosomal protein L27-A

Chain AW

60S ribosomal protein L2-A

Chain BN

60S ribosomal protein L34-A