J3_6SV4_054

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6SV4_054 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.2

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6SV4|1|BQ|C|3298
6SV4|1|BQ|A|3299
6SV4|1|BQ|U|3300
*
6SV4|1|BQ|A|3314
6SV4|1|BQ|G|3315
6SV4|1|BQ|A|3316
6SV4|1|BQ|U|3317
6SV4|1|BQ|G|3318
*
6SV4|1|BQ|C|3388
6SV4|1|BQ|U|3389
6SV4|1|BQ|G|3390

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A