J3_6SV4_093

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6SV4|1|2|A|217, 6SV4|1|2|U|238, 6SV4|1|2|C|239, 6SV4|1|2|U|240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2|A|213
6SV4|1|2|G|214
6SV4|1|2|A|215
6SV4|1|2|U|216
6SV4|1|2|A|217
6SV4|1|2|A|218
6SV4|1|2|A|219
6SV4|1|2|A|220
6SV4|1|2|A|221
6SV4|1|2|A|222
6SV4|1|2|U|223
6SV4|1|2|C|224
6SV4|1|2|A|225
6SV4|1|2|A|226
6SV4|1|2|U|227
6SV4|1|2|G|228
*
6SV4|1|2|C|237
6SV4|1|2|U|238
6SV4|1|2|C|239
6SV4|1|2|U|240
6SV4|1|2|U|241
6SV4|1|2|U|242
6SV4|1|2|G|243
*
6SV4|1|2|C|250
6SV4|1|2|A|251
6SV4|1|2|U|252

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A