J3_6SV4_095

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAG*CUUACG*CAAAG

Length

15 nucleotides

Bulged bases

6SV4|1|2|A|1093

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2|C|1037
6SV4|1|2|U|1038
6SV4|1|2|A|1039
6SV4|1|2|G|1040
*
6SV4|1|2|C|1078
6SV4|1|2|U|1079
6SV4|1|2|U|1080
6SV4|1|2|A|1081
6SV4|1|2|C|1082
6SV4|1|2|G|1083
*
6SV4|1|2|C|1090
6SV4|1|2|A|1091
6SV4|1|2|A|1092
6SV4|1|2|A|1093
6SV4|1|2|G|1094

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S0-A

Chain a

40S ribosomal protein S21-A

Chain b

40S ribosomal protein S22-A

Chain e

40S ribosomal protein S26-A

Chain f

40S ribosomal protein S27-A