J3_6SV4_096

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUGGA*UAC*GGAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2|A|1166
6SV4|1|2|G|1167
6SV4|1|2|U|1168
6SV4|1|2|G|1169
6SV4|1|2|G|1170
6SV4|1|2|A|1171
*
6SV4|1|2|U|1468
6SV4|1|2|A|1469
6SV4|1|2|C|1470
*
6SV4|1|2|G|1574
6SV4|1|2|G|1575
6SV4|1|2|A|1576
6SV4|1|2|A|1577
6SV4|1|2|U|1578
6SV4|1|2|U|1579

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Rps5p

Chain F

40S ribosomal protein S16-A

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A

Chain n

Transfer RNA; tRNA