J3_6SV4_103
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAG*CAGG*CUCGAAU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|2c|A|760
6SV4|1|2c|G|761
6SV4|1|2c|A|762
6SV4|1|2c|G|763
*
6SV4|1|2c|C|773
6SV4|1|2c|A|774
6SV4|1|2c|G|775
6SV4|1|2c|G|776
*
6SV4|1|2c|C|784
6SV4|1|2c|U|785
6SV4|1|2c|C|786
6SV4|1|2c|G|787
6SV4|1|2c|A|788
6SV4|1|2c|A|789
6SV4|1|2c|U|790
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Sc
- 40S ribosomal protein S4-A
- Chain Wc
- 40S ribosomal protein S9-A
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain dc
- 40S ribosomal protein S24-A
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