J3_6SV4_108
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CACCAU
- Length
- 23 nucleotides
- Bulged bases
- 6SV4|1|BQ|U|1554, 6SV4|1|BQ|C|1556, 6SV4|1|BQ|A|1558, 6SV4|1|BQ|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|BQ|A|1537
6SV4|1|BQ|G|1538
6SV4|1|BQ|A|1539
6SV4|1|BQ|U|1540
6SV4|1|BQ|G|1541
6SV4|1|BQ|G|1542
*
6SV4|1|BQ|C|1551
6SV4|1|BQ|G|1552
6SV4|1|BQ|U|1553
6SV4|1|BQ|U|1554
6SV4|1|BQ|U|1555
6SV4|1|BQ|C|1556
6SV4|1|BQ|A|1557
6SV4|1|BQ|A|1558
6SV4|1|BQ|A|1559
6SV4|1|BQ|G|1560
6SV4|1|BQ|G|1561
*
6SV4|1|BQ|C|1579
6SV4|1|BQ|A|1580
6SV4|1|BQ|C|1581
6SV4|1|BQ|C|1582
6SV4|1|BQ|A|1583
6SV4|1|BQ|U|1584
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AF
- 60S ribosomal protein L37-A
- Chain AH
- 60S ribosomal protein L25
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
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