J3_6SV4_128

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GAAC*GUAAAAG

Length

14 nucleotides

Bulged bases

6SV4|1|ZQ|A|2703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|ZQ|C|2664
6SV4|1|ZQ|U|2665
6SV4|1|ZQ|C|2666
*
6SV4|1|ZQ|G|2690
6SV4|1|ZQ|A|2691
6SV4|1|ZQ|A|2692
6SV4|1|ZQ|C|2693
*
6SV4|1|ZQ|G|2700
6SV4|1|ZQ|U|2701
6SV4|1|ZQ|A|2702
6SV4|1|ZQ|A|2703
6SV4|1|ZQ|A|2704
6SV4|1|ZQ|A|2705
6SV4|1|ZQ|G|2706

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZI

60S ribosomal protein L5

Chain ZJ

60S ribosomal protein L21-A

Chain ZR

5S ribosomal RNA; 5S rRNA

Chain zG

60S ribosomal protein L11-A

Chain zP

60S ribosomal protein L42-A