J3_6SV4_129

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAU

Length

32 nucleotides

Bulged bases

6SV4|1|ZQ|A|3172, 6SV4|1|ZQ|G|3173, 6SV4|1|ZQ|A|3215, 6SV4|1|ZQ|G|3216, 6SV4|1|ZQ|C|3217, 6SV4|1|ZQ|G|3219, 6SV4|1|ZQ|A|3268, 6SV4|1|ZQ|U|3270, 6SV4|1|ZQ|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|ZQ|A|3170
6SV4|1|ZQ|U|3171
6SV4|1|ZQ|A|3172
6SV4|1|ZQ|G|3173
6SV4|1|ZQ|A|3174
6SV4|1|ZQ|U|3175
6SV4|1|ZQ|G|3176
*
6SV4|1|ZQ|C|3212
6SV4|1|ZQ|A|3213
6SV4|1|ZQ|U|3214
6SV4|1|ZQ|A|3215
6SV4|1|ZQ|G|3216
6SV4|1|ZQ|C|3217
6SV4|1|ZQ|A|3218
6SV4|1|ZQ|G|3219
6SV4|1|ZQ|G|3220
*
6SV4|1|ZQ|C|3265
6SV4|1|ZQ|G|3266
6SV4|1|ZQ|A|3267
6SV4|1|ZQ|A|3268
6SV4|1|ZQ|U|3269
6SV4|1|ZQ|U|3270
6SV4|1|ZQ|G|3271
6SV4|1|ZQ|C|3272
6SV4|1|ZQ|A|3273
6SV4|1|ZQ|A|3274
6SV4|1|ZQ|U|3275
6SV4|1|ZQ|G|3276
6SV4|1|ZQ|U|3277
6SV4|1|ZQ|C|3278
6SV4|1|ZQ|A|3279
6SV4|1|ZQ|U|3280

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZK

60S ribosomal protein L33-A

Chain ZM

60S ribosomal protein L6-A

Chain zM

60S ribosomal protein L14-A

Chain zU

60S ribosomal protein L16-A

Chain zX

60S ribosomal protein L17-A