J3_6SV4_132
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- 6SV4|1|2c|A|1321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SV4_132 not in the Motif Atlas
- Homologous match to J3_8CRE_083
- Geometric discrepancy: 0.3245
- The information below is about J3_8CRE_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.4
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SV4|1|2c|U|1293
6SV4|1|2c|G|1294
*
6SV4|1|2c|U|1303
6SV4|1|2c|G|1304
6SV4|1|2c|U|1305
6SV4|1|2c|C|1306
*
6SV4|1|2c|G|1318
6SV4|1|2c|A|1319
6SV4|1|2c|U|1320
6SV4|1|2c|A|1321
6SV4|1|2c|A|1322
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Gc
- 40S ribosomal protein S17-B
- Chain Pc
- 40S ribosomal protein S0-A
- Chain Rc
- 40S ribosomal protein S2
- Chain ac
- 40S ribosomal protein S21-A
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