J3_6SWA_006
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 6SWA|1|q|A|1595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SWA_006 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1617
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6SWA|1|q|G|1527
6SWA|1|q|C|1528
6SWA|1|q|A|1529
6SWA|1|q|G|1530
*
6SWA|1|q|C|1562
6SWA|1|q|G|1563
6SWA|1|q|U|1564
6SWA|1|q|A|1565
6SWA|1|q|G|1566
*
6SWA|1|q|U|1591
6SWA|1|q|C|1592
6SWA|1|q|C|1593
6SWA|1|q|G|1594
6SWA|1|q|A|1595
6SWA|1|q|C|1596
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain e
- 60S ribosomal protein L34
- Chain n
- 60S ribosomal protein L37a
- Chain o
- 60S ribosomal protein L19
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