J3_6SWA_012
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6SWA|1|q|A|4242
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SWA_012 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1191
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SWA|1|q|C|4203
6SWA|1|q|U|4204
6SWA|1|q|C|4205
*
6SWA|1|q|G|4229
6SWA|1|q|A|4230
6SWA|1|q|G|4231
*
6SWA|1|q|C|4240
6SWA|1|q|A|4241
6SWA|1|q|A|4242
6SWA|1|q|A|4243
6SWA|1|q|A|4244
6SWA|1|q|G|4245
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11
- Chain R
- 60S ribosomal protein L21
- Chain s
- 5S ribosomal RNA; 5S rRNA
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