J3_6SWA_018
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6SWA|1|q|U|348, 6SWA|1|q|A|356, 6SWA|1|r|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SWA_018 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0787
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6SWA|1|q|C|345
6SWA|1|q|G|346
6SWA|1|q|A|347
6SWA|1|q|U|348
6SWA|1|q|A|349
6SWA|1|q|G|350
6SWA|1|q|U|351
6SWA|1|q|C|352
6SWA|1|q|A|353
6SWA|1|q|A|354
6SWA|1|q|C|355
6SWA|1|q|A|356
6SWA|1|q|A|357
6SWA|1|q|G|358
6SWA|1|q|U|359
6SWA|1|q|A|360
6SWA|1|q|C|361
*
6SWA|1|q|G|368
6SWA|1|q|G|369
6SWA|1|q|A|370
6SWA|1|q|A|371
6SWA|1|q|A|372
6SWA|1|q|G|373
*
6SWA|1|r|C|21
6SWA|1|r|U|22
6SWA|1|r|C|23
6SWA|1|r|G|24
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
- Chain r
- 5.8S ribosomal RNA (157-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain W
- 60S ribosomal protein L26
- Chain h
- 60S ribosomal protein L37
- Chain j
- 60S ribosomal protein L39
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