J3_6SWA_019
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 6SWA|1|q|G|403, 6SWA|1|q|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SWA_019 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.3791
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6SWA|1|q|U|374
6SWA|1|q|U|375
6SWA|1|q|G|376
6SWA|1|q|A|377
6SWA|1|q|A|378
6SWA|1|q|A|379
6SWA|1|q|A|380
6SWA|1|q|G|381
6SWA|1|q|A|382
6SWA|1|q|A|383
6SWA|1|q|C|384
*
6SWA|1|q|G|395
6SWA|1|q|A|396
6SWA|1|q|G|397
6SWA|1|q|U|398
6SWA|1|q|U|399
6SWA|1|q|C|400
6SWA|1|q|A|401
6SWA|1|q|A|402
6SWA|1|q|G|403
6SWA|1|q|A|404
6SWA|1|q|G|405
6SWA|1|q|G|406
6SWA|1|q|G|407
6SWA|1|q|C|408
6SWA|1|q|G|409
*
6SWA|1|r|C|19
6SWA|1|r|A|20
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
- Chain r
- 5.8S ribosomal RNA (157-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain O
- 60S ribosomal protein L17
- Chain W
- 60S ribosomal protein L26
- Chain j
- 60S ribosomal protein L39
- Chain t
- Proliferation-associated protein 2G4
Coloring options: