J3_6SWA_025
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGG*CUGAC*GGACAGU
- Length
- 16 nucleotides
- Bulged bases
- 6SWA|1|q|G|4046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SWA_025 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.1997
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SWA|1|q|A|3907
6SWA|1|q|C|3908
6SWA|1|q|G|3909
6SWA|1|q|G|3910
*
6SWA|1|q|C|4044
6SWA|1|q|U|4045
6SWA|1|q|G|4046
6SWA|1|q|A|4047
6SWA|1|q|C|4048
*
6SWA|1|q|G|4130
6SWA|1|q|G|4131
6SWA|1|q|A|4132
6SWA|1|q|C|4133
6SWA|1|q|A|4134
6SWA|1|q|G|4135
6SWA|1|q|U|4136
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain M
- 60S ribosomal protein L15
- Chain g
- 60S ribosomal protein L36
Coloring options: