J3_6SWC_003

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGCCAGUGG*CGC

Length

14 nucleotides

Bulged bases

6SWC|1|2|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|G|639
6SWC|1|2|G|640
*
6SWC|1|2|C|684
6SWC|1|2|G|685
6SWC|1|2|C|686
6SWC|1|2|C|687
6SWC|1|2|A|688
6SWC|1|2|G|689
6SWC|1|2|U|690
6SWC|1|2|G|691
6SWC|1|2|G|692
*
6SWC|1|2|C|699
6SWC|1|2|G|700
6SWC|1|2|C|701

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain 5

mRNA

Chain A

30S ribosomal protein S3Ae

Chain M

30S ribosomal protein S11

Chain Q

30S ribosomal protein S15