J3_6SWC_006
3D structure
- PDB id
- 6SWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUAAUUG*CGGGAACCUCAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6SWC|1|2|G|946, 6SWC|1|2|G|948, 6SWC|1|2|A|950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWC|1|2|U|927
6SWC|1|2|U|928
6SWC|1|2|U|929
6SWC|1|2|A|930
6SWC|1|2|A|931
6SWC|1|2|U|932
6SWC|1|2|U|933
6SWC|1|2|G|934
*
6SWC|1|2|C|945
6SWC|1|2|G|946
6SWC|1|2|G|947
6SWC|1|2|G|948
6SWC|1|2|A|949
6SWC|1|2|A|950
6SWC|1|2|C|951
6SWC|1|2|C|952
6SWC|1|2|U|953
6SWC|1|2|C|954
6SWC|1|2|A|955
6SWC|1|2|C|956
*
6SWC|1|2|G|1195
6SWC|1|2|G|1196
6SWC|1|2|C|1197
6SWC|1|2|U|1198
6SWC|1|2|A|1199
Current chains
- Chain 2
- 16S ribosomal rRNA
Nearby chains
- Chain 6
- Translation initiation factor 1A
- Chain L
- 30S ribosomal protein S10
- Chain O
- 30S ribosomal protein S13
- Chain P
- 30S ribosomal protein S14 type Z
- Chain T
- 30S ribosomal protein S19
Coloring options: