J3_6SWC_006

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUAAUUG*CGGGAACCUCAC*GGCUA

Length

25 nucleotides

Bulged bases

6SWC|1|2|G|946, 6SWC|1|2|G|948, 6SWC|1|2|A|950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|U|927
6SWC|1|2|U|928
6SWC|1|2|U|929
6SWC|1|2|A|930
6SWC|1|2|A|931
6SWC|1|2|U|932
6SWC|1|2|U|933
6SWC|1|2|G|934
*
6SWC|1|2|C|945
6SWC|1|2|G|946
6SWC|1|2|G|947
6SWC|1|2|G|948
6SWC|1|2|A|949
6SWC|1|2|A|950
6SWC|1|2|C|951
6SWC|1|2|C|952
6SWC|1|2|U|953
6SWC|1|2|C|954
6SWC|1|2|A|955
6SWC|1|2|C|956
*
6SWC|1|2|G|1195
6SWC|1|2|G|1196
6SWC|1|2|C|1197
6SWC|1|2|U|1198
6SWC|1|2|A|1199

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain 6

Translation initiation factor 1A

Chain L

30S ribosomal protein S10

Chain O

30S ribosomal protein S13

Chain P

30S ribosomal protein S14 type Z

Chain T

30S ribosomal protein S19