3D structure

PDB id
6SWC (explore in PDB, NAKB, or RNA 3D Hub)
Description
IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UUUAAUUG*CGGGAACCUCAC*GGCUA
Length
25 nucleotides
Bulged bases
6SWC|1|2|G|946, 6SWC|1|2|G|948, 6SWC|1|2|A|950
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6SWC|1|2|U|927
6SWC|1|2|U|928
6SWC|1|2|U|929
6SWC|1|2|A|930
6SWC|1|2|A|931
6SWC|1|2|U|932
6SWC|1|2|U|933
6SWC|1|2|G|934
*
6SWC|1|2|C|945
6SWC|1|2|G|946
6SWC|1|2|G|947
6SWC|1|2|G|948
6SWC|1|2|A|949
6SWC|1|2|A|950
6SWC|1|2|C|951
6SWC|1|2|C|952
6SWC|1|2|U|953
6SWC|1|2|C|954
6SWC|1|2|A|955
6SWC|1|2|C|956
*
6SWC|1|2|G|1195
6SWC|1|2|G|1196
6SWC|1|2|C|1197
6SWC|1|2|U|1198
6SWC|1|2|A|1199

Current chains

Chain 2
16S ribosomal rRNA

Nearby chains

Chain 6
Translation initiation factor 1A
Chain L
30S ribosomal protein S10
Chain O
30S ribosomal protein S13
Chain P
30S ribosomal protein S14 type Z
Chain T
30S ribosomal protein S19

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.589 s