J3_6SWC_007

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAC*GAGAGG*C(4AC)GAAAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|G|962
6SWC|1|2|C|963
6SWC|1|2|G|964
6SWC|1|2|A|965
6SWC|1|2|C|966
*
6SWC|1|2|G|1008
6SWC|1|2|A|1009
6SWC|1|2|G|1010
6SWC|1|2|A|1011
6SWC|1|2|G|1012
6SWC|1|2|G|1013
*
6SWC|1|2|C|1183
6SWC|1|2|4AC|1184
6SWC|1|2|G|1185
6SWC|1|2|A|1186
6SWC|1|2|A|1187
6SWC|1|2|A|1188
6SWC|1|2|C|1189

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain P

30S ribosomal protein S14 type Z