J3_6SWC_008
3D structure
- PDB id
- 6SWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- C(4AC)GUCAG*CGAGAC*GCGACGG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWC|1|2|C|1027
6SWC|1|2|4AC|1028
6SWC|1|2|G|1029
6SWC|1|2|U|1030
6SWC|1|2|C|1031
6SWC|1|2|A|1032
6SWC|1|2|G|1033
*
6SWC|1|2|C|1072
6SWC|1|2|G|1073
6SWC|1|2|A|1074
6SWC|1|2|G|1075
6SWC|1|2|A|1076
6SWC|1|2|C|1077
*
6SWC|1|2|G|1162
6SWC|1|2|C|1163
6SWC|1|2|G|1164
6SWC|1|2|A|1165
6SWC|1|2|C|1166
6SWC|1|2|G|1167
6SWC|1|2|G|1168
Current chains
- Chain 2
- 16S ribosomal rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S5
- Chain K
- 30S ribosomal protein S9
- Chain L
- 30S ribosomal protein S10
- Chain P
- 30S ribosomal protein S14 type Z
- Chain S
- 30S ribosomal protein S17e
- Chain Z
- 30S ribosomal protein S3
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