J3_6SWC_009

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAC*GCGUC*GUAA

Length

12 nucleotides

Bulged bases

6SWC|1|2|A|1066

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|U|1038
6SWC|1|2|A|1039
6SWC|1|2|C|1040
*
6SWC|1|2|G|1047
6SWC|1|2|C|1048
6SWC|1|2|G|1049
6SWC|1|2|U|1050
6SWC|1|2|C|1051
*
6SWC|1|2|G|1064
6SWC|1|2|U|1065
6SWC|1|2|A|1066
6SWC|1|2|A|1067

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain F

30S ribosomal protein S5