J3_6SWC_011

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

6SWC|1|2|U|1214, 6SWC|1|2|U|1276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|C|1211
6SWC|1|2|A|1212
6SWC|1|2|A|1213
6SWC|1|2|U|1214
6SWC|1|2|G|1215
*
6SWC|1|2|C|1270
6SWC|1|2|U|1271
6SWC|1|2|C|1272
6SWC|1|2|A|1273
6SWC|1|2|G|1274
6SWC|1|2|U|1275
6SWC|1|2|U|1276
6SWC|1|2|C|1277
*
6SWC|1|2|G|1308
6SWC|1|2|C|1309
6SWC|1|2|U|1310
6SWC|1|2|G|1311

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain O

30S ribosomal protein S13

Chain U

30S ribosomal protein S19e