J3_6SWC_013
3D structure
- PDB id
- 6SWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGG*CUUGG*(4AC)GACG
- Length
- 13 nucleotides
- Bulged bases
- 6SWC|1|2|U|620
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWC|1|2|C|552
6SWC|1|2|G|553
6SWC|1|2|G|554
*
6SWC|1|2|C|618
6SWC|1|2|U|619
6SWC|1|2|U|620
6SWC|1|2|G|621
6SWC|1|2|G|622
*
6SWC|1|2|4AC|718
6SWC|1|2|G|719
6SWC|1|2|A|720
6SWC|1|2|C|721
6SWC|1|2|G|722
Current chains
- Chain 2
- 16S ribosomal rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S8
- Chain N
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S17
- Chain W
- 30S ribosomal protein S27e
Coloring options: