J3_6SWC_016

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGAG*CUAC*GGAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|U|915
6SWC|1|2|G|916
6SWC|1|2|G|917
6SWC|1|2|A|918
6SWC|1|2|G|919
*
6SWC|1|2|C|1208
6SWC|1|2|U|1209
6SWC|1|2|A|1210
6SWC|1|2|C|1211
*
6SWC|1|2|G|1311
6SWC|1|2|G|1312
6SWC|1|2|A|1313
6SWC|1|2|A|1314

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain H

30S ribosomal protein S7

Chain K

30S ribosomal protein S9

Chain O

30S ribosomal protein S13

Chain U

30S ribosomal protein S19e