J3_6SZS_023
3D structure
- PDB id
- 6SZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6SZS_023 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.0887
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SZS|1|a|C|1063
6SZS|1|a|G|1064
6SZS|1|a|U|1065
6SZS|1|a|C|1066
6SZS|1|a|A|1067
6SZS|1|a|G|1068
*
6SZS|1|a|C|1107
6SZS|1|a|G|1108
6SZS|1|a|C|1109
6SZS|1|a|A|1110
6SZS|1|a|A|1111
6SZS|1|a|C|1112
6SZS|1|a|C|1113
*
6SZS|1|a|G|1187
6SZS|1|a|A|1188
6SZS|1|a|U|1189
6SZS|1|a|G|1190
6SZS|1|a|A|1191
6SZS|1|a|C|1192
6SZS|1|a|G|1193
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
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