3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CAAAUUUGAAA*UAAUUUGGAG*CGAAG
Length
26 nucleotides
Bulged bases
6T4Q|1|C1|U|117, 6T4Q|1|C1|G|156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T4Q_001 not in the Motif Atlas
Homologous match to J3_8C3A_001
Geometric discrepancy: 0.0683
The information below is about J3_8C3A_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_88489.1
Basepair signature
cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
2

Unit IDs

6T4Q|1|C1|C|113
6T4Q|1|C1|A|114
6T4Q|1|C1|A|115
6T4Q|1|C1|A|116
6T4Q|1|C1|U|117
6T4Q|1|C1|U|118
6T4Q|1|C1|U|119
6T4Q|1|C1|G|120
6T4Q|1|C1|A|121
6T4Q|1|C1|A|122
6T4Q|1|C1|A|123
*
6T4Q|1|C1|U|149
6T4Q|1|C1|A|150
6T4Q|1|C1|A|151
6T4Q|1|C1|U|152
6T4Q|1|C1|U|153
6T4Q|1|C1|U|154
6T4Q|1|C1|G|155
6T4Q|1|C1|G|156
6T4Q|1|C1|A|157
6T4Q|1|C1|G|158
*
6T4Q|1|C1|C|263
6T4Q|1|C1|G|264
6T4Q|1|C1|A|265
6T4Q|1|C1|A|266
6T4Q|1|C1|G|267

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LG
60S ribosomal protein L8-A
Chain LL
60S ribosomal protein L13-A
Chain LN
60S ribosomal protein L15-A
Chain Lh
60S ribosomal protein L35-A
Chain Li
60S ribosomal protein L36-A

Coloring options:


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