J3_6T4Q_005
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 6T4Q|1|C1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T4Q_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.0882
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6T4Q|1|C1|A|828
6T4Q|1|C1|U|829
6T4Q|1|C1|A|830
6T4Q|1|C1|G|831
*
6T4Q|1|C1|C|863
6T4Q|1|C1|G|864
6T4Q|1|C1|U|865
6T4Q|1|C1|A|866
6T4Q|1|C1|G|867
*
6T4Q|1|C1|U|892
6T4Q|1|C1|C|893
6T4Q|1|C1|G|894
6T4Q|1|C1|A|895
6T4Q|1|C1|A|896
6T4Q|1|C1|U|897
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-A
- Chain LR
- 60S ribosomal protein L19-A
- Chain Lg
- 60S ribosomal protein L34-A
- Chain Lp
- 60S ribosomal protein L43-A
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