J3_6T4Q_008

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

6T4Q|1|C1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T4Q_008 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0775

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6T4Q|1|C1|U|1479
6T4Q|1|C1|G|1480
6T4Q|1|C1|A|1481
6T4Q|1|C1|A|1482
6T4Q|1|C1|G|1483
6T4Q|1|C1|U|1484
6T4Q|1|C1|G|1485
*
6T4Q|1|C1|C|1857
6T4Q|1|C1|A|1858
6T4Q|1|C1|A|1859
*
6T4Q|1|C1|U|1871
6T4Q|1|C1|C|1872
6T4Q|1|C1|U|1873
6T4Q|1|C1|A|1874

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain Lg

60S ribosomal protein L34-A