3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
AUUG*CUUAUU*AAGACAUU
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T4Q_012 not in the Motif Atlas
Homologous match to J3_8C3A_008
Geometric discrepancy: 0.0615
The information below is about J3_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_18654.1
Basepair signature
cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
Number of instances in this motif group
2

Unit IDs

6T4Q|1|C1|A|2432
6T4Q|1|C1|U|2433
6T4Q|1|C1|U|2434
6T4Q|1|C1|G|2435
*
6T4Q|1|C1|C|2512
6T4Q|1|C1|U|2513
6T4Q|1|C1|U|2514
6T4Q|1|C1|A|2515
6T4Q|1|C1|U|2516
6T4Q|1|C1|U|2517
*
6T4Q|1|C1|A|2590
6T4Q|1|C1|A|2591
6T4Q|1|C1|G|2592
6T4Q|1|C1|A|2593
6T4Q|1|C1|C|2594
6T4Q|1|C1|A|2595
6T4Q|1|C1|U|2596
6T4Q|1|C1|U|2597

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LA
60S ribosomal protein L2-A
Chain LG
60S ribosomal protein L8-A
Chain LN
60S ribosomal protein L15-A
Chain Li
60S ribosomal protein L36-A

Coloring options:


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