J3_6T4Q_027

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T4Q_027 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0883

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6T4Q|1|C2|U|1293
6T4Q|1|C2|G|1294
*
6T4Q|1|C2|U|1303
6T4Q|1|C2|G|1304
6T4Q|1|C2|U|1305
6T4Q|1|C2|C|1306
*
6T4Q|1|C2|G|1318
6T4Q|1|C2|A|1319
6T4Q|1|C2|U|1320
6T4Q|1|C2|A|1321
6T4Q|1|C2|A|1322

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S0-A

Chain SC

40S ribosomal protein S2

Chain SR

40S ribosomal protein S17-A