J3_6T59_018

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

6T59|1|54|C|216, 6T59|1|54|C|217, 6T59|1|54|A|218, 6T59|1|54|G|219, 6T59|1|54|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T59|1|54|C|196
6T59|1|54|A|197
6T59|1|54|A|198
6T59|1|54|G|199
*
6T59|1|54|C|215
6T59|1|54|C|216
6T59|1|54|C|217
6T59|1|54|A|218
6T59|1|54|G|219
6T59|1|54|C|220
6T59|1|54|C|221
6T59|1|54|C|222
6T59|1|54|G|223
6T59|1|54|U|224
6T59|1|54|G|225
6T59|1|54|G|226
6T59|1|54|A|227
6T59|1|54|C|228
*
6T59|1|54|G|240
6T59|1|54|G|241
6T59|1|54|U|242
6T59|1|54|A|243
6T59|1|54|G|244

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Y3

Ribosomal protein L26