J3_6T59_027

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

6T59|1|54|U|4882, 6T59|1|54|A|4938, 6T59|1|54|C|4940, 6T59|1|54|A|4943, 6T59|1|54|C|4944, 6T59|1|54|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T59|1|54|C|4749
6T59|1|54|G|4750
6T59|1|54|G|4751
6T59|1|54|U|4752
6T59|1|54|U|4753
6T59|1|54|G|4754
*
6T59|1|54|C|4879
6T59|1|54|C|4880
6T59|1|54|U|4881
6T59|1|54|U|4882
6T59|1|54|C|4883
*
6T59|1|54|G|4936
6T59|1|54|C|4937
6T59|1|54|A|4938
6T59|1|54|C|4939
6T59|1|54|C|4940
6T59|1|54|G|4941
6T59|1|54|C|4942
6T59|1|54|A|4943
6T59|1|54|C|4944
6T59|1|54|G|4945
6T59|1|54|U|4946
6T59|1|54|U|4947
6T59|1|54|C|4948
6T59|1|54|G|4949
6T59|1|54|U|4950
6T59|1|54|G|4951

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain M3

Ribosomal protein L14

Chain O3

uL13

Chain f3

eL33