J3_6T7I_040

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6T7I|1|C2|A|46, 6T7I|1|C2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T7I_040 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0978

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6T7I|1|C2|A|41
6T7I|1|C2|G|42
6T7I|1|C2|A|43
6T7I|1|C2|U|44
6T7I|1|C2|U|45
6T7I|1|C2|A|46
6T7I|1|C2|A|47
6T7I|1|C2|G|48
*
6T7I|1|C2|C|431
6T7I|1|C2|G|432
6T7I|1|C2|C|433
6T7I|1|C2|G|434
6T7I|1|C2|C|435
6T7I|1|C2|A|436
6T7I|1|C2|A|437
6T7I|1|C2|A|438
6T7I|1|C2|U|439
*
6T7I|1|C2|A|464
6T7I|1|C2|G|465
6T7I|1|C2|U|466

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A