J3_6T7T_003
3D structure
- PDB id
- 6T7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6T7T|1|C1|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T7T_003 not in the Motif Atlas
- Geometric match to J3_5TBW_003
- Geometric discrepancy: 0.1164
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6T7T|1|C1|U|502
6T7T|1|C1|C|503
*
6T7T|1|C1|G|588
6T7T|1|C1|A|589
6T7T|1|C1|G|590
6T7T|1|C1|G|591
6T7T|1|C1|A|592
6T7T|1|C1|C|593
6T7T|1|C1|U|594
6T7T|1|C1|G|595
6T7T|1|C1|C|596
6T7T|1|C1|G|597
*
6T7T|1|C1|C|606
6T7T|1|C1|A|607
6T7T|1|C1|A|608
6T7T|1|C1|G|609
6T7T|1|C1|G|610
6T7T|1|C1|A|611
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LE
- 60S ribosomal protein L6-B
- Chain LF
- 60S ribosomal protein L7-A
- Chain Le
- 60S ribosomal protein L32
Coloring options: