J3_6T7T_007

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T7T_007 not in the Motif Atlas

Geometric match to J3_8P9A_052

Geometric discrepancy: 0.2937

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

6T7T|1|C1|G|1230
6T7T|1|C1|A|1231
6T7T|1|C1|C|1232
*
6T7T|1|C1|G|1256
6T7T|1|C1|C|1257
6T7T|1|C1|U|1258
6T7T|1|C1|A|1259
6T7T|1|C1|A|1260
6T7T|1|C1|G|1261
6T7T|1|C1|G|1262
*
6T7T|1|C1|C|1277
6T7T|1|C1|A|1278
6T7T|1|C1|C|1279

Current chains

Chain C1

25S rRNA

Nearby chains