J3_6T7T_017

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T7T_017 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1129

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6T7T|1|C2|A|41
6T7T|1|C2|G|42
*
6T7T|1|C2|C|433
6T7T|1|C2|G|434
6T7T|1|C2|C|435
6T7T|1|C2|A|436
6T7T|1|C2|A|437
6T7T|1|C2|A|438
6T7T|1|C2|U|439
*
6T7T|1|C2|A|464
6T7T|1|C2|G|465
6T7T|1|C2|U|466

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A