3D structure

PDB id
6T7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGAG*CAG*UCGAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T7T_019 not in the Motif Atlas
Homologous match to J3_8P9A_073
Geometric discrepancy: 0.1202
The information below is about J3_8P9A_073
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97642.1
Basepair signature
cWW-tSH-F-F-cWW-F-tWW-cWW
Number of instances in this motif group
2

Unit IDs

6T7T|1|C2|A|760
6T7T|1|C2|G|761
6T7T|1|C2|A|762
6T7T|1|C2|G|763
*
6T7T|1|C2|C|773
6T7T|1|C2|A|774
6T7T|1|C2|G|775
*
6T7T|1|C2|U|785
6T7T|1|C2|C|786
6T7T|1|C2|G|787
6T7T|1|C2|A|788
6T7T|1|C2|A|789
6T7T|1|C2|U|790

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4-A
Chain SJ
40S ribosomal protein S9-A
Chain SY
40S ribosomal protein S24-A

Coloring options:


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