J3_6T7T_034
3D structure
- PDB id
- 6T7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6T7T|1|C1|A|398, 6T7T|1|C1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T7T_034 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0784
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6T7T|1|C1|A|369
6T7T|1|C1|U|370
6T7T|1|C1|G|371
6T7T|1|C1|A|372
6T7T|1|C1|A|373
6T7T|1|C1|A|374
6T7T|1|C1|A|375
6T7T|1|C1|G|376
6T7T|1|C1|A|377
6T7T|1|C1|A|378
6T7T|1|C1|C|379
*
6T7T|1|C1|G|390
6T7T|1|C1|A|391
6T7T|1|C1|G|392
6T7T|1|C1|U|393
6T7T|1|C1|G|394
6T7T|1|C1|A|395
6T7T|1|C1|A|396
6T7T|1|C1|A|397
6T7T|1|C1|A|398
6T7T|1|C1|A|399
6T7T|1|C1|G|400
6T7T|1|C1|U|401
6T7T|1|C1|A|402
6T7T|1|C1|C|403
6T7T|1|C1|G|404
*
6T7T|1|C3|C|19
6T7T|1|C3|U|20
Current chains
- Chain C1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LP
- 60S ribosomal protein L17-A
- Chain LY
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L39
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