J3_6T83_001
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 6T83|1|1b|U|117, 6T83|1|1b|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T83_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.1089
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6T83|1|1b|C|113
6T83|1|1b|A|114
6T83|1|1b|A|115
6T83|1|1b|A|116
6T83|1|1b|U|117
6T83|1|1b|U|118
6T83|1|1b|U|119
6T83|1|1b|G|120
6T83|1|1b|A|121
6T83|1|1b|A|122
6T83|1|1b|A|123
*
6T83|1|1b|U|149
6T83|1|1b|A|150
6T83|1|1b|A|151
6T83|1|1b|U|152
6T83|1|1b|U|153
6T83|1|1b|U|154
6T83|1|1b|G|155
6T83|1|1b|G|156
6T83|1|1b|A|157
6T83|1|1b|G|158
*
6T83|1|1b|C|263
6T83|1|1b|G|264
6T83|1|1b|A|265
6T83|1|1b|A|266
6T83|1|1b|G|267
Current chains
- Chain 1b
- 25S rRNA
Nearby chains
- Chain Gy
- 60S ribosomal protein L8-A
- Chain Ly
- 60S ribosomal protein L13-A
- Chain Ny
- 60S ribosomal protein L15-A
- Chain hb
- 60S ribosomal protein L35-A
- Chain ib
- 60S ribosomal protein L36-A
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