3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
AUAG*CGUAG*UCGAAU
Length
15 nucleotides
Bulged bases
6T83|1|1b|A|896
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T83_005 not in the Motif Atlas
Homologous match to J3_5TBW_005
Geometric discrepancy: 0.1212
The information below is about J3_5TBW_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_33851.1
Basepair signature
cWW-tSH-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6T83|1|1b|A|828
6T83|1|1b|U|829
6T83|1|1b|A|830
6T83|1|1b|G|831
*
6T83|1|1b|C|863
6T83|1|1b|G|864
6T83|1|1b|U|865
6T83|1|1b|A|866
6T83|1|1b|G|867
*
6T83|1|1b|U|892
6T83|1|1b|C|893
6T83|1|1b|G|894
6T83|1|1b|A|895
6T83|1|1b|A|896
6T83|1|1b|U|897

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain Ay
60S ribosomal protein L2-A
Chain Ry
60S ribosomal protein L19-A
Chain gy
60S ribosomal protein L34-A
Chain pb
60S ribosomal protein L43-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5399 s