3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
AG*CGCAAAU*AGU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6T83_018 not in the Motif Atlas
Geometric match to J3_8C3A_082
Geometric discrepancy: 0.1627
The information below is about J3_8C3A_082
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.2
Basepair signature
cWW-F-cWW-F-F-cSW-F-cWW
Number of instances in this motif group
5

Unit IDs

6T83|1|2b|A|41
6T83|1|2b|G|42
*
6T83|1|2b|C|433
6T83|1|2b|G|434
6T83|1|2b|C|435
6T83|1|2b|A|436
6T83|1|2b|A|437
6T83|1|2b|A|438
6T83|1|2b|U|439
*
6T83|1|2b|A|464
6T83|1|2b|G|465
6T83|1|2b|U|466

Current chains

Chain 2b
18S rRNA

Nearby chains

Chain Jb
40S ribosomal protein S9-A
Chain Xb
40S ribosomal protein S23-A

Coloring options:


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