J3_6T83_038

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAG*CGUAG*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T83_038 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1478

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6T83|1|Aa|U|829
6T83|1|Aa|A|830
6T83|1|Aa|G|831
*
6T83|1|Aa|C|863
6T83|1|Aa|G|864
6T83|1|Aa|U|865
6T83|1|Aa|A|866
6T83|1|Aa|G|867
*
6T83|1|Aa|U|892
6T83|1|Aa|C|893
6T83|1|Aa|G|894
6T83|1|Aa|A|895

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L19-A

Chain Da

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L34-A