J3_6T83_040

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T83_040 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2642

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6T83|1|Aa|G|1230
6T83|1|Aa|A|1231
6T83|1|Aa|C|1232
*
6T83|1|Aa|G|1256
6T83|1|Aa|C|1257
6T83|1|Aa|U|1258
6T83|1|Aa|A|1259
6T83|1|Aa|A|1260
6T83|1|Aa|G|1261
6T83|1|Aa|G|1262
*
6T83|1|Aa|C|1277
6T83|1|Aa|A|1278
6T83|1|Aa|C|1279

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain ba

60S acidic ribosomal protein P0