J3_6T83_051

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T83_051 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1695

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6T83|1|a|A|41
6T83|1|a|G|42
*
6T83|1|a|C|433
6T83|1|a|G|434
6T83|1|a|C|435
6T83|1|a|A|436
6T83|1|a|A|437
6T83|1|a|A|438
6T83|1|a|U|439
*
6T83|1|a|A|464
6T83|1|a|G|465
6T83|1|a|U|466

Current chains

Chain a

18S rRNA

Nearby chains

Chain k

40S ribosomal protein S9-A

Chain y

40S ribosomal protein S23-A