J3_6T83_066
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6T83|1|1b|U|343, 6T83|1|1b|A|351, 6T83|1|3b|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T83_066 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0992
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
6T83|1|1b|C|340
6T83|1|1b|G|341
6T83|1|1b|A|342
6T83|1|1b|U|343
6T83|1|1b|A|344
6T83|1|1b|G|345
6T83|1|1b|C|346
6T83|1|1b|G|347
6T83|1|1b|A|348
6T83|1|1b|A|349
6T83|1|1b|C|350
6T83|1|1b|A|351
6T83|1|1b|A|352
6T83|1|1b|G|353
6T83|1|1b|U|354
6T83|1|1b|A|355
6T83|1|1b|C|356
*
6T83|1|1b|G|363
6T83|1|1b|G|364
6T83|1|1b|A|365
6T83|1|1b|A|366
6T83|1|1b|A|367
6T83|1|1b|G|368
*
6T83|1|3b|C|21
6T83|1|3b|U|22
6T83|1|3b|U|23
6T83|1|3b|G|24
Current chains
- Chain 1b
- 25S rRNA
- Chain 3b
- 5.8S rRNA
Nearby chains
- Chain Cy
- 60S ribosomal protein L4-A
- Chain Yy
- 60S ribosomal protein L26-A
- Chain jb
- 60S ribosomal protein L37-A
- Chain lb
- 60S ribosomal protein L39
Coloring options: