J3_6T83_067
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6T83|1|1b|A|398, 6T83|1|1b|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6T83_067 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1083
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6T83|1|1b|A|369
6T83|1|1b|U|370
6T83|1|1b|G|371
6T83|1|1b|A|372
6T83|1|1b|A|373
6T83|1|1b|A|374
6T83|1|1b|A|375
6T83|1|1b|G|376
6T83|1|1b|A|377
6T83|1|1b|A|378
6T83|1|1b|C|379
*
6T83|1|1b|G|390
6T83|1|1b|A|391
6T83|1|1b|G|392
6T83|1|1b|U|393
6T83|1|1b|G|394
6T83|1|1b|A|395
6T83|1|1b|A|396
6T83|1|1b|A|397
6T83|1|1b|A|398
6T83|1|1b|A|399
6T83|1|1b|G|400
6T83|1|1b|U|401
6T83|1|1b|A|402
6T83|1|1b|C|403
6T83|1|1b|G|404
*
6T83|1|3b|C|19
6T83|1|3b|U|20
Current chains
- Chain 1b
- 25S rRNA
- Chain 3b
- 5.8S rRNA
Nearby chains
- Chain Cy
- 60S ribosomal protein L4-A
- Chain Py
- 60S ribosomal protein L17-A
- Chain Yy
- 60S ribosomal protein L26-A
- Chain lb
- 60S ribosomal protein L39
Coloring options: