J3_6T83_073

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6T83|1|2b|A|46, 6T83|1|2b|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6T83_073 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1306

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6T83|1|2b|A|41
6T83|1|2b|G|42
6T83|1|2b|A|43
6T83|1|2b|U|44
6T83|1|2b|U|45
6T83|1|2b|A|46
6T83|1|2b|A|47
6T83|1|2b|G|48
*
6T83|1|2b|C|431
6T83|1|2b|G|432
6T83|1|2b|C|433
6T83|1|2b|G|434
6T83|1|2b|C|435
6T83|1|2b|A|436
6T83|1|2b|A|437
6T83|1|2b|A|438
6T83|1|2b|U|439
*
6T83|1|2b|A|464
6T83|1|2b|G|465
6T83|1|2b|U|466

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Jb

40S ribosomal protein S9-A

Chain Xb

40S ribosomal protein S23-A