J3_6TB3_016
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6TB3|1|BQ|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TB3_016 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.0961
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6TB3|1|BQ|U|502
6TB3|1|BQ|C|503
*
6TB3|1|BQ|G|588
6TB3|1|BQ|A|589
6TB3|1|BQ|G|590
6TB3|1|BQ|G|591
6TB3|1|BQ|A|592
6TB3|1|BQ|C|593
6TB3|1|BQ|U|594
6TB3|1|BQ|G|595
6TB3|1|BQ|C|596
6TB3|1|BQ|G|597
*
6TB3|1|BQ|C|606
6TB3|1|BQ|A|607
6TB3|1|BQ|A|608
6TB3|1|BQ|G|609
6TB3|1|BQ|G|610
6TB3|1|BQ|A|611
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain BE
- 60S ribosomal protein L4-A
- Chain BG
- 60S ribosomal protein L32
- Chain BM
- 60S ribosomal protein L6-B
- Chain BO
- 60S ribosomal protein L7-A
Coloring options: