J3_6TB3_020

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TB3_020 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2996

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6TB3|1|BQ|G|1230
6TB3|1|BQ|A|1231
6TB3|1|BQ|C|1232
*
6TB3|1|BQ|G|1256
6TB3|1|BQ|C|1257
6TB3|1|BQ|U|1258
6TB3|1|BQ|A|1259
6TB3|1|BQ|A|1260
6TB3|1|BQ|G|1261
6TB3|1|BQ|G|1262
*
6TB3|1|BQ|C|1277
6TB3|1|BQ|A|1278
6TB3|1|BQ|C|1279

Current chains

Chain BQ

25S rRNA

Nearby chains