J3_6TBV_006

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_006 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0523

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

6TBV|1|16S1|C|936
6TBV|1|16S1|A|937
6TBV|1|16S1|A|938
6TBV|1|16S1|G|939
*
6TBV|1|16S1|C|1344
6TBV|1|16S1|U|1345
6TBV|1|16S1|A|1346
6TBV|1|16S1|G|1347
6TBV|1|16S1|U|1348
6TBV|1|16S1|A|1349
6TBV|1|16S1|A|1350
*
6TBV|1|16S1|U|1372
6TBV|1|16S1|G|1373
6TBV|1|16S1|A|1374
6TBV|1|16S1|A|1375
6TBV|1|16S1|U|1376
6TBV|1|16S1|A|1377
6TBV|1|16S1|C|1378
6TBV|1|16S1|G|1379

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S071

30S ribosomal protein S7

Chain S091

30S ribosomal protein S9