J3_6TBV_014

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_014 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.06

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|G|30
6TBV|1|23S1|C|31
*
6TBV|1|23S1|G|474
6TBV|1|23S1|C|475
6TBV|1|23S1|G|476
6TBV|1|23S1|A|477
6TBV|1|23S1|A|478
6TBV|1|23S1|A|479
6TBV|1|23S1|A|480
6TBV|1|23S1|G|481
*
6TBV|1|23S1|C|509
6TBV|1|23S1|C|510

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L201

50S ribosomal protein L20

Chain L241

50S ribosomal protein L24